{"id":525,"date":"2016-11-27T11:41:16","date_gmt":"2016-11-27T19:41:16","guid":{"rendered":"https:\/\/shapirolabnew.che.caltech.edu\/?page_id=525"},"modified":"2025-12-31T00:22:35","modified_gmt":"2025-12-31T08:22:35","slug":"resources","status":"publish","type":"page","link":"https:\/\/shapirolab.caltech.edu\/?page_id=525","title":{"rendered":"Resources"},"content":{"rendered":"

Plasmids<\/span><\/span><\/strong><\/p>\n

Acoustic Reporter Genes 2.0 for Mammalian Cells and Bacteria<\/strong>
\nFrom Hurt, Buss, Duan et al, Nature Biotechnology<\/em> (2023).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

Acoustic Biosensors of Protease Activity<\/strong>
\nFrom Lakshmanan, Jin et al, Nature Chemical Biology 16, 988-996<\/em> (2020).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

Mammalian Acoustic Reporter Genes<\/strong>
\nFrom Farhadi et al, Science 365, 1469-75<\/em> (2019).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

Bacterial Acoustic Reporter Genes<\/strong>
\nFrom Bourdeau et al, Nature 553, 86\u201390<\/em> (2018).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

Acoustic Protein Nanostructures<\/strong>
\nFrom Lakshmanan et al, ACS Nano 10, 7314-7322<\/em> (2016).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

From Farhadi et al, AIChE Journal<\/em> (2018).<\/a>
\nPlasmid available from Addgene<\/a>.<\/p>\n

Thermal Bioswitches<\/strong>
\nFrom Piraner, Abedi et al, Nature Chemical Biology 13, 75-80<\/em> (2017).<\/a>
\nPlasmids available from Addgene<\/a>.<\/p>\n

Software<\/span><\/span><\/strong>
\nBURST Pulse Sequence<\/strong>
\nFrom Sawyer et al, Nature Methods<\/em> (2021).<\/a>
\nMatlab Scripts (GitHub<\/a>)<\/p>\n

xAM Pulse Sequence<\/strong>
\nFrom Maresca, Sawyer et al, Physical Review X<\/em> (2018).<\/a>
\nMatlab Scripts (GitHub<\/a>)<\/p>\n

uAM Pulse Sequence<\/strong>
\nFrom Rabut et al, Applied Physics Letters<\/em> (2021).<\/a>
\nMatlab Scripts (GitHub<\/a>)<\/p>\n

Monte Carlo Simulations of Diffusing Nuclear Spins<\/strong>
\nFrom Mukherjee, Wu et al, Nature Communications<\/em> (2016).<\/a>
\nMatlab and Python Scripts (ZIP file<\/a>)<\/p>\n

Other Resources<\/span><\/span><\/strong>
\nATAC Central: Resources for Acoustically Targeted Chemogenetics<\/strong>
\nFrom Szablowski et al, Nature Biomedical Engineering<\/em> 2, 474-484 (2018).<\/a>
\nATAC central website<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"

Plasmids Acoustic Reporter Genes 2.0 for Mammalian Cells and Bacteria From Hurt, Buss, Duan et al, Nature Biotechnology (2023). Plasmids available from Addgene. Acoustic Biosensors of Protease Activity From Lakshmanan, …<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":5,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-525","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/pages\/525","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=525"}],"version-history":[{"count":28,"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/pages\/525\/revisions"}],"predecessor-version":[{"id":1992,"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=\/wp\/v2\/pages\/525\/revisions\/1992"}],"wp:attachment":[{"href":"https:\/\/shapirolab.caltech.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=525"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}