Publications

(#equal contribution, *corresponding)

Ramesh P, Hwang SJ, Davis HC, Lee-Gosselin A, Bharadwaj V, English MA, Sheng J, Iyer V, Shapiro MG*. Ultraparamagnetic cells formed through intracellular oxidation and chelation of paramagnetic iron. Angewandte Chemie International Edition (2018). article

Szablowski JO, Lue B, Lee-Gosselin A, Malounda D, Shapiro MG*. Acoustically targeted chemogenetics for the non-invasive control of neural circuits.
Nature Biomedical Engineering 2, 474-484 (2018).
article | readcube | news and views | press | behind the paper

Sato T*, Shapiro MG#*, Tsao DY#*. Ultrasonic neuromodulation causes widespread cortical activation via an indirect auditory mechanism. Neuron 98, 1031-1041 (2018). article | companion article

Lu GJ, Farhadi A, Szablowski JO, Lee Gosselin A, Barnes SR, Lakshmanan A, Bourdeau RW, Shapiro MG*. Acoustically modulated magnetic resonance imaging of gas-filled protein nanostructures. Nature Materials 17, 456–463 (2018).
article | readcube | news and views | press | behind the paper

Maresca D#, Lakshmanan A#, Abedi M, Bar-Zion A, Farhadi A, Lu GJ, Szablowski JO, Wu D, Yoo S, Shapiro MG*. Biomolecular ultrasound and sonogenetics. Annual Review of Chemical and Biomolecular Engineering 9, 229-252 (2018). article

Lu GJ#, Farhadi A#, Mukherjee A, Shapiro MG*. Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging. Current Opinion in Chemical Biology 45, 57-63 (2018). article

Farhadi A, Ho G, Kunth M, Ling B, Lakshmanan A, Lu GJ, Bourdeau RW, Schröder L, Shapiro MG*.  Recombinantly expressed gas vesicles as nanoscale contrast agents for ultrasound and hyperpolarized MRI. AIChE Journal 64, 2927-2933 (2018). article

Davis HC#, Ramesh P#, Bhatnagar A, Lee-Gosselin A, Barry JF, Glenn DR, Walsworth RL, Shapiro MG*. Mapping the microscale origins of MRI contrast with subcellular NV diamond magnetometry. Nature Communications 9, 131 (2018). article | press

Bourdeau RW, Lee-Gosselin A, Lakshmanan A, Farhadi A, Ravindra Kumar S, Nety SP, Shapiro MG*. Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts. Nature 553, 86–90 (2018).
article | readcube | news and views | press | behind the paper

Monge M, Lee-Gosselin A, Shapiro MG*, Emami A*. Localization of microscale devices in vivo using addressable transmitters operated as magnetic spins. Nature Biomedical Engineering 1, 736-744 (2017).
article | readcube | news and views | press | behind the paper

Lakshmanan A#, Lu GJ#, Farhadi A#, Nety SP#, Kunth M, Lee-Gosselin A, Maresca D, Bourdeau RW, Yin M, Yan J, Witte C, Malounda D, Foster FS, Schröder L, Shapiro MG*. Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI. Nature Protocols 12, 2050-2080 (2017). article | readcube

Piraner DI, Farhadi A, Davis HC, Wu D, Maresca D, Szablowski JO, Shapiro MG*. Going deeper: biomolecular tools for acoustic and magnetic imaging and control of cellular function. Biochemistry (2017). article

Ojala DS, Sun S, Santiago-Ortiz JL, Shapiro MG, Romero PA, Schaffer DV*. In vivo selection of a computationally designed SCHEMA AAV library yields a novel variant for infection of adult neural stem cells in the SVZ. Molecular Therapy (2017). article

Maley AM, Lu GJ, Shapiro MG, Corn RM*. Characterizing single polymeric and protein nanoparticles with surface plasmon resonance imaging measurements. ACS Nano (2017). article

Mukherjee A, Davis HC, Ramesh P, Lu GJ, Shapiro MG*. Biomolecular MRI reporters: evolution of new mechanisms. Progress in NMR Spectroscopy (2017). article

Le Floc’h J*, Zlitni A, Bilton HA, Yin M, Farhadi A, Janzen NR, Shapiro MG, Valliant JF*, Foster FS. In vivo biodistribution of radiolabeled acoustic protein nanostructures. Molecular Imaging and Biology 1-10 (2017). article

Cherin E*, Melis JM, Bourdeau RW, Yin M, Kochmann DM, Foster FS#, Shapiro MG#. Acoustic behavior of Halobacterium salinarum gas vesicles in the high frequency range: experiments and modeling. Ultrasound in Medicine and Biology 43, 1016-1030 (2017). article

Maresca D, Lakshmanan A, Lee-Gosselin A, Melis JM, Ni YL, Bourdeau RW, Kochmann DM, Shapiro MG*. Nonlinear ultrasound imaging of nanoscale acoustic biomolecules. Applied Physics Letters 110, 073704 (2017). article

Gilad AA*, Shapiro MG*. Molecular Imaging in Synthetic Biology, and Synthetic Biology in Molecular Imaging. Molecular Imaging and Biology 19 (2017). article

Piraner DI#, Abedi MH#, Moser BA, Lee-Gosselin A, Shapiro MG*. Tunable thermal bioswitches for in vivo control of microbial therapeutics. Nature Chemical Biology 13, 75-80 (2017). article | press | video | highlight in Nature Methods

Mukherjee A#, Wu D#, Davis HC, Shapiro MG*. Noninvasive imaging using reporter genes altering cellular water permeability. Nature Communications 7, 13891 (2016). article | press | highlight in Lab Animal

Barksiy DA, Goodson BM, Branca RT, Lu GJ, Shapiro MG, Schröder L, Chekmenev EY*, et al. NMR hyperpolarization techniques of gases. Chemistry–A European Journal (2016).
article

Lakshmanan A, Farhadi A, Nety SP, Lee-Gosselin A, Bourdeau RW, Maresca D, Shapiro MG*. Molecular engineering of acoustic protein nanostructures. ACS Nano 10, 7314-22 (2016). 
articlepress

Shapiro MG*, Ramirez RM, Sperling LJ, Sun G, Pines A, Schaffer DV, Bajaj VS*. Genetically encoded reporters for hyperpolarized xenon magnetic resonance imaging.  Nature Chemistry 6, 629-34 (2014). article | commentary in Science Translational Medicine

Shapiro MG*, Goodwill PW, Neogy A, Yin M, Foster FS, Schaffer DV, Conolly SM. Biogenic gas nanostructures as ultrasonic molecular reporters.  Nature Nanotechnology 9, 311-6 (2014). article | news and views

Marblestone AH, Zamft BM, Shapiro MG, Boyden ES, Church GM, Kording KP, et al. Physical Principles for Scalable Neural Recording. Frontiers in Computational Neuroscience (2013). article

Shapiro MG*, Priest MF, Siegel PH, Bezanilla F*. Thermal mechanisms of millimeter wave stimulation of excitable cells.  Biophysical Journal (2013). article

Romero PA, Shapiro MG, Arnold FH, Jasanoff A. Directed evolution of protein-based neurotransmitter sensors for MRI. Methods in Molecular Biology 995, 193-205 (2013). article

Shapiro MG*, Frazier SJ, Lester HA. Unparalleled control of neural activity using orthogonal pharmacogenetics.  ACS Chemical Neuroscience (2012). article

Shapiro MG, Homma K, Villarreal S, Richter CP, Bezanilla F. Infrared light excites cells by changing their electrical capacitance. Nature Communications 3:736 (2012). article

Shapiro MG, Westmeyer GG, Romero PA, Szablowski JO, Küster B, Shah A, Otey CR, Langer R, Arnold FH, Jasanoff A. Directed evolution of a magnetic resonance imaging contrast agent for noninvasive imaging of dopamine. Nature Biotechnology 28, 264-70 (2010). article

Shapiro MG, Szablowsky JO, Langer R, Jasanoff A. Protein nanoparticles engineered to sense kinase activity in MRI. Journal of the American Chemical Society 131, 2484-6 (2009). article

Shapiro MG, Atanasijevich T, Faas H, Westmeyer GG, Jasanoff A. Dynamic imaging with MRI contrast agents: quantitative considerations. Magnetic Resonance Imaging 24, 449-62 (2006). article

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